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Marco Chierici

Researcher
  • Phone: 0461314578
  • FBK Povo
Short bio

Marco Chierici is a research scientist at FBK with a Ph.D. in Bioengineering. He is expert on bioinformatic tools for the analysis of high-throughput biological data, as well as on scientific programming with R and Python. Among his research interests is the application of artificial intelligence methods (i.e., deep learning) to computational biology. At MPBA he has been responsible of next-generation sequencing bioinformatic pipelines since 2008, also developing methods for reproducibility of analyses. He was scientific chief instructor of WebValley 2009 and 2014.

Publications
  1. Zhenqiang Su; Paweł P Łabaj; Sheng Li; Jean Thierry-Mieg; Danielle Thierry-Mieg; Wei Shi; Charles Wang; Gary P Schroth; Robert A Setterquist; John F Thompson; Wendell D Jones; Wenzhong Xiao; Weihong Xu; Roderick V Jensen; Reagan Kelly; Joshua Xu; Ana Conesa; Cesare Furlanello; Hanlin Gao; Huixiao Hong; Nadereh Jafari; Stan Letovsky; Yang Liao; Fei Lu; Edward J Oakeley; Zhiyu Peng; Craig A Praul; Javier Santoyo-Lopez; Andreas Scherer; Tieliu Shi; Gordon K Smyth; Frank Staedtler; Peter Sykacek; Xin-Xing Tan; E Aubrey Thompson; Jo Vandesompele; May D Wang; Jian Wang; Russell D Wolfinger; Jiri Zavadil; Scott S Auerbach; Wenjun Bao; Hans Binder; Thomas Blomquist; Murray H Brilliant; Pierre R Bushel; Weimin Cai; Jennifer G Catalano; Ching-Wei Chang; Tao Chen; Geng Chen; Rong Chen; Marco Chierici; Tzu-Ming Chu; Djork-Arné Clevert; Youping Deng; Adnan Derti; Viswanath Devanarayan; Zirui Dong; Joaquin Dopazo; Tingting Du; Hong Fang; Yongxiang Fang; Mario Fasold; Anita Fernandez; Matthias Fischer; Pedro Furió-Tari; James C Fuscoe; Florian Caimet; Stan Gaj; Jorge Gandara; Huan Gao; Weigong Ge; Yoichi Gondo; Binsheng Gong; Meihua Gong; Zhuolin Gong; Bridgett Green; Chao Guo; Lei Guo; Li-Wu Guo; James Hadfield; Jan Hellemans; Sepp Hochreiter; Meiwen Jia; Min Jian; Charles D Johnson; Suzanne Kay; Jos Kleinjans; Samir Lababidi; Shawn Levy; Quan-Zhen Li; Li Li; Li Li; Peng Li; Yan Li; Haiqing Li; Jianying Li; Shiyong Li; Simon M Lin; Francisco J López; Xin Lu; Heng Luo; Xiwen Ma; Joseph Meehan; Dalila B Megherbi; Nan Mei; Bing Mu; Baitang Ning; Akhilesh Pandey; Javier Pérez-Florido; Roger G Perkins; Ryan Peters; John H Phan; Mehdi Pirooznia; Feng Qian; Tao Qing; Lucille Rainbow; Philippe Rocca-Serra; Laure Sambourg; Susanna-Assunta Sansone; Scott Schwartz; Ruchir Shah; Jie Shen; Todd M Smith; Oliver Stegle; Nancy Stralis-Pavese; Elia Stupka; Yutaka Suzuki; Lee T Szkotnicki; Matthew Tinning; Bimeng Tu; Joost van Delft; Alicia Vela-Boza; Elisa Venturini; Stephen J Walker; Liqing Wan; Wei Wang; Jinhui Wang; Jun Wang; Eric D Wieben; James C Willey; Po-Yen Wu; Jiekun Xuan; Yong Yang; Zhan Ye; Ye Yin; Ying Yu; Yate-Ching Yuan; John Zhang; Ke K Zhang; Wenqian Zhang; Wenwei Zhang; Yanyan Zhang; Chen Zhao; Yuanting Zheng; Yiming Zhou; Paul Zumbo; Weida Tong; David P Kreil; Christopher E Mason; Leming Shi,
    A comprehensive assessment of RNA-Seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium,
    in «NATURE BIOTECHNOLOGY»,
    vol. 32,
    2014
    , pp. 903 -
    914
  2. C. Wang; B. Gong; P.R. Bushel; J. Thierry-Mieg; D. Thierry-Mieg; J. Xu; H. Fang; H. Hong; J. Shen; Z. Su; J. Meehan; X. Li; L. Yang; H. Li; P.P. Labaj; D.P. Krell; D. Megherbi; S. Gaj; F. Calment; J. van Delft; J. Kleinjans; A. Sherer; V. Devanarayan; J. Wang; Y. Yang; H.-R. Qian; L.J. Lancashire; M. Bessarabova; Y. Nikolsky; C. Furlanello; M. Chierici; D. Albanese; G. Jurman; S. Riccadonna; M. Filosi; R. Visintainer; K.K. Zhang; J. Li; J.-H. Hsieh; D.L Svoboda; J.C. Fuscoe; Y. Deng; L. Shi; R.S. Paules; S.S. Auerbach; W. Tong,
    The concordance between RNA-Seq and microarray data depends on chemical treatment and transcript abundance,
    in «NATURE BIOTECHNOLOGY»,
    vol. 32,
    n. 9,
    2014
    , pp. 926 -
    932
  3. P.E. Corneo; A. Pellegrini; L. Cappellin; M. Roncador; M. Chierici; C. Gessler; I. Pertot,
    Microbial community structure in vineyard soils across altitudinal gradients and in different seasons.,
    in «FEMS MICROBIOLOGY ECOLOGY»,
    vol. 84,
    n. 3,
    2013
    , pp. 588 -
    602
  4. M. Chierici; D. Albanese; P. Franceschi; C. Furlanello,
    TOFwave: Reproducibility in Biomarker Discovery from time-of-flight Mass Spectrometry Data.,
    in «MOLECULAR BIOSYSTEMS»,
    2012
  5. M. Chierici; K. Miclaus; S. Vega; C. Furlanello,
    An interactive effect of batch size and composition contributes to discordant results in GWAS with the CHIAMO genotyping algorithm.,
    in «PHARMACOGENOMICS JOURNAL»,
    vol. 10,
    2010
    , pp. 355 -
    363
  6. H. Hong; L. Shi; Z. Su; W. Ge; W. Jones; W. Czika; K. Miclaus; C. Lambert; S. Vega; J. Zhang; B. Ning; J. Liu; B. Green; L. Xu; H. Fang; R. Perkins; S. Lin; N. Jafari; K. Park; T. Ahn; M. Chierici; C. Furlanello; L. Zhang; R. Wolfinger; F. Goodsaid; W. Tong,
    Assessing sources of inconsistencies in genotypes and their effects on genome-wide association studies with HapMap samples.,
    in «PHARMACOGENOMICS JOURNAL»,
    vol. 10,
    2010
    , pp. 364 -
    374
  7. L. Zhang; S. Yin; K. Miclaus; M. Chierici; S. Vega; C. Lambert; H. Hong; R. Wolfinger; C. Furlanello; F. Goodsaid,
    Assessment of variability in GWAS with CRLMM genotyping algorithm on WTCCC Coronary Artery Disease.,
    in «PHARMACOGENOMICS JOURNAL»,
    vol. 10,
    2010
    , pp. 347 -
    354
  8. K. Miclaus; M. Chierici; C. Lambert; L. Zhang; S. Vega; H. Hong; S. Yin; C. Furlanello; R. Wolfinger; F. Goodsaid,
    Variability in GWAS Analysis: the Impact of Genotype Calling Algorithm Inconsistencies.,
    in «PHARMACOGENOMICS JOURNAL»,
    vol. 10,
    2010
    , pp. 324 -
    335
  9. K. Miclaus; R. Wolfinger; S. Vega; M. Chierici; C. Furlanello; C. Lambert; H. Hong; L. Zhang; S. Yin; F. Goodsaid,
    Batch Effects in the BRLMM Genotype Calling Algorithm Influence GWAS Results for the Affymetrix 500K Array.,
    in «PHARMACOGENOMICS JOURNAL»,
    vol. 10,
    2010
    , pp. 336 -
    346
  10. Gianluigi Pillonetto; Giuseppe De Nicolao; Marco Chierici; Claudio Cobelli,
    Fast algorithms for nonparametric population modeling of large data sets,
    in «AUTOMATICA»,
    vol. 45,
    2009
    , pp. 173 -
    179

Pages