You are here

Marco Chierici

Senior Researcher
  • Phone: +39 0461 314578
  • FBK Povo
Short bio

Marco Chierici is a research scientist at FBK with a Ph.D. in Bioengineering. He is expert on bioinformatic tools for the analysis of high-throughput biological data, as well as on scientific programming with R and Python. Among his research interests is the application of artificial intelligence methods (i.e., deep learning) to computational biology. At MPBA he has been responsible of next-generation sequencing bioinformatic pipelines since 2008, also developing methods for reproducibility of analyses. He was scientific chief instructor of WebValley 2009 and 2014.

Publications
  1. Jones, Wendell; Gong, Binsheng; Novoradovskaya, Natalia; Li, Dan; Kusko, Rebecca; Richmond, Todd A.; Johann, Donald J.; Bisgin, Halil; Sahraeian, Sayed Mohammad Ebrahim; Bushel, Pierre R.; Pirooznia, Mehdi; Wilkins, Katherine; Chierici, Marco; Bao, Wenjun; Basehore, Lee Scott; Lucas, Anne Bergstrom; Burgess, Daniel; Butler, Daniel J.; Cawley, Simon; Chang, Chia-Jung; Chen, Guangchun; Chen, Tao; Chen, Yun-Ching; Craig, Daniel J.; del Pozo, Angela; Foox, Jonathan; Francescatto, Margherita; Fu, Yutao; Furlanello, Cesare; Giorda, Kristina; Grist, Kira P.; Guan, Meijian; Hao, Yingyi; Happe, Scott; Hariani, Gunjan; Haseley, Nathan; Jasper, Jeff; Jurman, Giuseppe; Kreil, David Philip; Łabaj, Paweł; Lai, Kevin; Li, Jianying; Li, Quan-Zhen; Li, Yulong; Li, Zhiguang; Liu, Zhichao; López, Mario Solís; Miclaus, Kelci; Miller, Raymond; Mittal, Vinay K.; Mohiyuddin, Marghoob; Pabón-Peña, Carlos; Parsons, Barbara L.; Qiu, Fujun; Scherer, Andreas; Shi, Tieliu; Stiegelmeyer, Suzy; Suo, Chen; Tom, Nikola; Wang, Dong; Wen, Zhining; Wu, Leihong; Xiao, Wenzhong; Xu, Chang; Yu, Ying; Zhang, Jiyang; Zhang, Yifan; Zhang, Zhihong; Zheng, Yuanting; Mason, Christopher E.; Willey, James C.; Tong, Weida; Shi, Leming; Xu, Joshua,
    in «GENOME BIOLOGY»,
    vol. 22,
    n. 1,
    2021
    , pp. 111 -
  2. Gong, Binsheng; Li, Dan; Kusko, Rebecca; Novoradovskaya, Natalia; Zhang, Yifan; Wang, Shangzi; Pabón-Peña, Carlos; Zhang, Zhihong; Lai, Kevin; Cai, Wanshi; LoCoco, Jennifer S; Lader, Eric; Richmond, Todd A; Mittal, Vinay K; Liu, Liang-Chun; Johann, Donald J; Willey, James C; Bushel, Pierre R; Yu, Ying; Xu, Chang; Chen, Guangchun; Burgess, Daniel; Cawley, Simon; Giorda, Kristina; Haseley, Nathan; Qiu, Fujun; Wilkins, Katherine; Arib, Hanane; Attwooll, Claire; Babson, Kevin; Bao, Longlong; Bao, Wenjun; Lucas, Anne Bergstrom; Best, Hunter; Bhandari, Ambica; Bisgin, Halil; Blackburn, James; Blomquist, Thomas M; Boardman, Lisa; Burgher, Blake; Butler, Daniel J; Chang, Chia-Jung; Chaubey, Alka; Chen, Tao; Chierici, Marco; Chin, Christopher R; Close, Devin; Conroy, Jeffrey; Coleman, Jessica Cooley; Craig, Daniel J; Crawford, Erin; Del Pozo, Angela; Deveson, Ira W; Duncan, Daniel; Eterovic, Agda Karina; Fan, Xiaohui; Foox, Jonathan; Furlanello, Cesare; Ghosal, Abhisek; Glenn, Sean; Guan, Meijian; Haag, Christine; Hang, Xinyi; Happe, Scott; Hennigan, Brittany; Hipp, Jennifer; Hong, Huixiao; Horvath, Kyle; Hu, Jianhong; Hung, Li-Yuan; Jarosz, Mirna; Kerkhof, Jennifer; Kipp, Benjamin; Kreil, David Philip; Łabaj, Paweł; Lapunzina, Pablo; Li, Peng; Li, Quan-Zhen; Li, Weihua; Li, Zhiguang; Liang, Yu; Liu, Shaoqing; Liu, Zhichao; Ma, Charles; Marella, Narasimha; Martín-Arenas, Rubén; Megherbi, Dalila B; Meng, Qingchang; Mieczkowski, Piotr A; Morrison, Tom; Muzny, Donna; Ning, Baitang; Parsons, Barbara L; Paweletz, Cloud P; Pirooznia, Mehdi; Qu, Wubin; Raymond, Amelia; Rindler, Paul; Ringler, Rebecca; Sadikovic, Bekim; Scherer, Andreas; Schulze, Egbert; Sebra, Robert; Shaknovich, Rita; Shi, Qiang; Shi, Tieliu; Silla-Castro, Juan Carlos; Smith, Melissa; López, Mario Solís; Song, Ping; Stetson, Daniel; Strahl, Maya; Stuart, Alan; Supplee, Julianna; Szankasi, Philippe; Tan, Haowen; Tang, Lin-Ya; Tao, Yonghui; Thakkar, Shraddha; Thierry-Mieg, Danielle; Thierry-Mieg, Jean; Thodima, Venkat J; Thomas, David; Tichý, Boris; Tom, Nikola; Garcia, Elena Vallespin; Verma, Suman; Walker, Kimbley; Wang, Charles; Wang, Junwen; Wang, Yexun; Wen, Zhining; Wirta, Valtteri; Wu, Leihong; Xiao, Chunlin; Xiao, Wenzhong; Xu, Shibei; Yang, Mary; Ying, Jianming; Yip, Shun H; Zhang, Guangliang; Zhang, Sa; Zhao, Meiru; Zheng, Yuanting; Zhou, Xiaoyan; Mason, Christopher E; Mercer, Timothy; Tong, Weida; Shi, Leming; Jones, Wendell; Xu, Joshua,
    Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions,
    in «GENOME BIOLOGY»,
    vol. 22,
    n. 1,
    2021
    , pp. 109 -
  3. Chierici, Marco; Francescatto, Margherita; Bussola, Nicole; Jurman, Giuseppe; Furlanello, Cesare,
    in «BIOLOGY DIRECT»,
    vol. 15,
    n. 1,
    2020
  4. Chierici, Marco; Bussola, Nicole; Marcolini, Alessia; Francescatto, Margherita; Zandonà, Alessandro; Trastulla, Lucia; Agostinelli, Claudio; Jurman, Giuseppe; Furlanello, Cesare,
    in «FRONTIERS IN ONCOLOGY»,
    vol. 10,
    2020
    , pp. 1065 -
  5. Melaiu, Ombretta; Chierici, Marco; Lucarini, Valeria; Jurman, Giuseppe; Conti, Libenzio; De Vito, Rita; Boldrini, Renata; Cifaldi, Loredana; Castellano, Aurora; Furlanello, Cesare; Barnaba, Vincenzo; Locatelli, Franco; Furci, Doriana,
    in «NATURE COMMUNICATIONS»,
    vol. 11,
    2020
    , pp. 5992 -
  6. Chierici, Marco; Giulini, Marco; Bussola, Nicole; Jurman, Giuseppe; Furlanello, Cesare,
    in «JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART C, ENVIRONMENTAL CARCINOGENESIS & ECOTOXICOLOGY REVIEWS»,
    vol. 36,
    n. 4,
    2019
    , pp. 237 -
    251
  7. Boldrini, Renata; De Pasquale Maria, Debora; Melaiu, Ombretta; Chierici, Marco; Jurman, Giuseppe; De Benedetti Maria, Chiara; Salfi Nunzio, C; Castellano, Aurora; Collini, Paola; Furlanello, Cesare; Pistoia, Vito; Cifaldi, Loredana; Terenziani, Monica; Fruci, Doriana,
    in «ONCOIMMUNOLOGY»,
    vol. 8,
    n. 2,
    2019
  8. Bizzego, Andrea; Bussola, Nicole; Chierici, Marco; Maggio, Valerio; Francescatto, Margherita; Cima, Luca; Cristoforetti, Marco; Jurman, Giuseppe; Furlanello, Cesare,
    Evaluating reproducibility of AI algorithms in digital pathology with DAPPER,
    in «PLOS COMPUTATIONAL BIOLOGY»,
    vol. 15,
    n. 3,
    2019
    , pp. e1006269 -
  9. Polano, Maurizio; Chierici, Marco; Dal Bo, Michele; Gentilini, Davide; Di Cintio, Federica; Baboci, Lorena; Gibbs, David L.; Furlanello, Cesare; Toffoli, Giuseppe,
    A Pan-Cancer Approach to Predict Responsiveness to Immune Checkpoint Inhibitors by Machine Learning,
    in «CANCERS»,
    vol. 11,
    n. 10,
    2019
    , pp. 1562 -
  10. Bizzego, A.; Bussola, N.; Salvalai, D.; Chierici, M.; Maggio, V.; Jurman, G.; Furlanello, C.,
    Proceedings of 2019 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB),
    2019
    , pp. 1-
    8
    , (2019 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB),
    Siena, Italy,
    9-11 July 2019)

Pages